203: Divergent Evolutionary Dynamics of Benign and Malignant Tumors
Base by Base19 Marras 2025

203: Divergent Evolutionary Dynamics of Benign and Malignant Tumors

Divergent Evolutionary Dynamics of Benign and Malignant Tumors

Music:
Enjoy the music based on this article at the end of the episode.

License:
This episode is based on an open-access article published under the Creative Commons Attribution 4.0 International License (CC BY 4.0) – https://creativecommons.org/licenses/by/4.0/

Support:
Base by Base – Stripe donations: https://donate.stripe.com/7sY4gz71B2sN3RWac5gEg00

Official website https://basebybase.com

On PaperCast Base by Base you’ll discover the latest in genomics, functional genomics, structural genomics, and proteomics.

Episode link: https://basebybase.com/episodes/divergent-evolutionary-dynamics-of-benign-and-malignant-tumors

️ Episode:
203: Divergent Evolutionary Dynamics of Benign and Malignant Tumors

️ Season:
1

Article title:
Divergent Evolutionary Dynamics of Benign and Malignant Tumors

Journal:
Proceedings of the National Academy of Sciences

DOI:
10.1073/pnas.2519203122

QC:
This episode was checked against the original article PDF and publication metadata for the episode release published on 2025-11-19.

QC Scope:
- article metadata and core scientific claims from the narration
- excludes analogies, intro/outro, and music
- transcript coverage: Audited the transcript portions that present the main comparative oncology findings: definitions of benign vs malignant tumors, the body-mass association, pathwise rate effects, diversification-rate effects, MPGLMM methodology, bird vs mammal differences, genome-architecture implications, and broader implications.
- transcript topics: Benign vs malignant tumor definitions; Body mass and tumor prevalence; Pathwise rate of body size evolution; Diversification rate and tumor prevalence; MPGLMM methodology; Birds vs mammals results

QC Summary:
- factual score: 10/10
- metadata score: 10/10
- supported core claims: 6
- claims flagged for review: 0
- metadata checks passed: 4
- metadata issues found: 0

Metadata Audited:
- article_doi
- article_title
- article_journal
- license

Factual Items Audited:
- Both benign and malignant tumor prevalence increase with body mass across birds and mammals.
- Malignant tumor prevalence is negatively associated with the pathwise rate of body size evolution.
- Benign tumor prevalence shows no significant association with the pathwise rate of body size evolution.
- Diversification rate is positively associated with tumor prevalence in birds for both tumor types; no significant association in mammals.
- Bird genome architecture (smaller, more compact genomes) may underlie the observed divergence via genomic instability and chromosomal rearrangements.
- Overall divergence: malignant tumors are constrained by body-size evolution; benign tumors persist with less constraint; distinct macroevolutionary drivers for each tumor type.

QC result: Pass.

Tämä jakso on lisätty Podme-palveluun avoimen RSS-syötteen kautta eikä se ole Podmen omaa tuotantoa. Siksi jakso saattaa sisältää mainontaa.

Jaksot(441)

439: Coembedding Sequence and Structure: CLSS Maps the Protein Universe

439: Coembedding Sequence and Structure: CLSS Maps the Protein Universe

Longo LM et al., PNAS - This episode summarizes a PNAS study introducing CLSS, a contrastive two-tower protein language model that coembeds domain sequences, structures, and subsequences into a shared...

11 Elo 23min

438: Mapping AIRE: a proactive atlas of 9,790 missense variants

438: Mapping AIRE: a proactive atlas of 9,790 missense variants

Axakova A et al., The American Journal of Human Genetics - Axakova et al. generated a variant effect map for AIRE using an insulin‑promoter GFP reporter in HEK293 cells to measure the functional impac...

10 Elo 24min

437: Cell villages and Dirichlet modeling map human cell fitness genetics

437: Cell villages and Dirichlet modeling map human cell fitness genetics

Hanson C et al., The American Journal of Human Genetics - Hanson et al. combine pooled multi-donor human neural progenitor cell "villages" with Townlet, a hierarchical Dirichlet regression model, to e...

9 Elo 28min

436: KIAP4 and the ARND family: building the Leishmania adhesion plaque

436: KIAP4 and the ARND family: building the Leishmania adhesion plaque

Owino BO et al., PNAS - Using TurboID proximity proteomics and microscopy, researchers identify KIAP4 as the canonical member of a conserved Adhesion Related NTPase-like Domain (ARND) family that loca...

8 Elo 24min

435: E. coli TGT binds two tRNAs — cryo-EM reveals dual engagement

435: E. coli TGT binds two tRNAs — cryo-EM reveals dual engagement

Ember M et al., PNAS - This episode examines a cryo-EM study of Escherichia coli tRNA-guanine transglycosylase (TGT) that solves the enzyme structure and its covalent intermediate with tRNATyr. Unexpe...

7 Elo 19min

434: High‑coverage genomes recast Japan's prehistoric demography

434: High‑coverage genomes recast Japan's prehistoric demography

Ishiya K et al., PNAS - This episode examines a PNAS study that reports two high-coverage ancient human genomes from mainland Japan (an Initial Jomon >67× and a Middle Yayoi >46×). The genomes enable ...

6 Elo 27min

433: Lactate, HSP90α and the Mitochondrial Switch

433: Lactate, HSP90α and the Mitochondrial Switch

Wu G et al., Proceedings of the National Academy of Sciences - This episode examines a PNAS study that identifies site-specific lactylation of HSP90α as a metabolic signal linking glycolysis to mitoch...

23 Heinä 23min

432: Echovirus 18: Capsid opening releases the genome

432: Echovirus 18: Capsid opening releases the genome

Mukhamedova L et al., Proceedings of the National Academy of Sciences - Using cryo-electron tomography and single-particle cryo-EM of infected Cos-7 cells, the authors show that echovirus 18 (E18) rel...

23 Heinä 18min

Suosittua kategoriassa Tiede

rss-poliisin-mieli
tiedekulma-podcast
rss-mita-tulisi-tietaa
docemilia
rss-hereilla
rss-bios-podcast
utelias-mieli
hippokrateen-vastaanotolla
rss-metsanomistaja-podcast
rss-lapsuuden-rakentajat-podcast
rss-sosiopodi
filocast-filosofian-perusteet
rss-tiedetta-vai-tarinaa
rss-duodecim-lehti
radio-antro
rss-totuuden-liepeilla