264: Single-TF rejuvenation: EZH2, E2F3, STAT3, ZFX identified by TRDP/Perturb-seq rejuvenate human fibroblasts and mouse liver

264: Single-TF rejuvenation: EZH2, E2F3, STAT3, ZFX identified by TRDP/Perturb-seq rejuvenate human fibroblasts and mouse liver

Sengstack J et al., Proc. Natl. Acad. Sci. U.S.A. 2026.123:e2515183123 - TRDP with Perturb-seq in human fibroblasts found that manipulating TFs (EZH2, E2F3, STAT3, ZFX) reversed aging hallmarks, and EZH2 overexpression rejuvenated aged mouse livers. Key terms: EZH2, E2F3, Perturb-seq, liver rejuvenation, transcription factor.

Study Highlights:
The study used passaged human neonatal dermal fibroblasts and aged mouse liver as model systems and applied the Transcriptional Rejuvenation Discovery Platform (TRDP) with Perturb-seq and CRISPRa/CRISPRi screens. Overexpressing E2F3 or EZH2 and repressing STAT3 or ZFX reversed global gene expression toward earlier passage states and ameliorated cellular aging hallmarks including increased proliferation, proteasome activity, and mitochondrial function. In aged mice, AAV8-mediated liver-specific EZH2 overexpression (log2fc ≈ 2.9) reversed thousands of age-associated gene changes (R_rej = -0.42), reduced steatosis and fibrosis, and improved glucose tolerance. Downstream transcriptional programs converged across perturbations, suggesting shared molecular requirements for cellular and tissue rejuvenation.

Conclusion:
Single transcription factor perturbations identified by TRDP can reverse cellular aging hallmarks in human fibroblasts and, in the case of EZH2 overexpression, partially rejuvenate aged mouse liver with improved histology and glucose tolerance.

Music:
Enjoy the music based on this article at the end of the episode.

Article title:
Systematic identification of single transcription factor perturbations that drive cellular and tissue rejuvenation

First author:
Sengstack J

Journal:
Proc. Natl. Acad. Sci. U.S.A. 2026.123:e2515183123

DOI:
10.1073/pnas.2515183123

Reference:
Sengstack J, Li H, Aghayev T, Bier G, Mobaraki M, Zheng J, Lin J, Deng C, Villeda SA, et al. Systematic identification of single transcription factor perturbations that drive cellular and tissue rejuvenation. Proc. Natl. Acad. Sci. U.S.A. 2026;123:e2515183123. Published January 9, 2026. https://doi.org/10.1073/pnas.2515183123

License:
This episode is based on an open-access article published under the Creative Commons Attribution 4.0 International License (CC BY 4.0) - https://creativecommons.org/licenses/by/4.0/

Support:
Base by Base – Stripe donations: https://donate.stripe.com/7sY4gz71B2sN3RWac5gEg00

Official website https://basebybase.com

On PaperCast Base by Base you’ll discover the latest in genomics, functional genomics, structural genomics, and proteomics.

Episode link: https://basebybase.com/episodes/ezh2-liver-rejuvenation

QC:
This episode was checked against the original article PDF and publication metadata for the episode release published on 2026-01-19.

QC Scope:
- article metadata and core scientific claims from the narration
- excludes analogies, intro/outro, and music
- transcript coverage: Audited sections describing the TRDP platform, identification of four rejuvenating TF perturbations, in vitro cellular aging hallmarks, in vivo liver experiments with EZH2, safety considerations, and broader implications of aging as a programmable, reversible state.
- transcript topics: TRDP platform and Perturb-seq workflow; Top rejuvenating TF perturbations: E2F3, EZH2, STAT3, ZFX; In vitro reversal of aging hallmarks in late-passage fibroblasts; In vivo liver rejuvenation in aged mice via EZH2 overexpression; Cancer risk considerations and mesenchymal drift; Broader implications and potential organ-wide applications of TRDP

QC Summary:
- factual score: 10/10
- metadata score: 10/10
- supported core claims: 6
- claims flagged for review: 0
- metadata checks passed: 4
- metadata issues found: 0

Metadata Audited:
- article_doi
- article_title
- article_journal

Det här avsnittet är hämtat från ett öppet RSS-flöde och publiceras inte av Podme. Det kan innehålla reklam.

Avsnitt(462)

461: Adult Ank3 loss quiets neurons and lowers a myelin protein

461: Adult Ank3 loss quiets neurons and lowers a myelin protein

Yoon et al., Proceedings of the National Academy of Sciences - ANK3, which encodes the scaffolding protein ankyrin-G, is a major risk gene for bipolar disorder and schizophrenia, yet what it does in a...

24 Sep 24min

460: The lupus variant that also sharpens antiviral defense

460: The lupus variant that also sharpens antiviral defense

Virolainen et al., The American Journal of Human Genetics - A lupus signal on chromosome 11p15 narrows to a coding haplotype in IRF7 that most people in the world carry. This study shows the risk form...

21 Sep 24min

459: Cerebral palsy genetics: 515 candidate genes, evidence for 89

459: Cerebral palsy genetics: 515 candidate genes, evidence for 89

Arterbery et al., The American Journal of Human Genetics - Hundreds of genes have been reported as causes of cerebral palsy, yet there is no agreed model of what a pathogenic variant in a child with C...

13 Sep 24min

458: Somatic or inherited? Reading TP53 risk from shared DNA

458: Somatic or inherited? Reading TP53 risk from shared DNA

MacGregor et al., The American Journal of Human Genetics - Pathogenic TP53 variants found in blood have long been read as inherited Li-Fraumeni alleles, but many turn out to be somatic clones that gre...

10 Sep 25min

457: A deletion that raises Alzheimer risk, a duplication that lowers it

457: A deletion that raises Alzheimer risk, a duplication that lowers it

Quenez O et al., The American Journal of Human Genetics - Rare copy-number variants were called from 22,319 exomes covering early-onset Alzheimer disease, late-onset disease and unaffected controls, t...

9 Sep 24min

456: Beyond exons: where heritability hides as traits get more polygenic

456: Beyond exons: where heritability hides as traits get more polygenic

Fuhrer J et al., The American Journal of Human Genetics - Across 34 complex traits and disorders, a MiXeR-based framework partitions SNP heritability over 74 functional annotations and finds that exon...

8 Sep 45min

455: Agentic genomics: the bottleneck moves from code to judgment

455: Agentic genomics: the bottleneck moves from code to judgment

Corpas M et al., Cell Genomics - A Perspective arguing that autonomous AI agents which discover, configure and chain bioinformatics operations from natural-language instructions have shifted the bottl...

7 Sep 13min

454: Efavirenz retarda a doença priônica mexendo no colesterol do cérebro [PT]

454: Efavirenz retarda a doença priônica mexendo no colesterol do cérebro [PT]

Ali T et al., JCI Insight - Um antirretroviral aprovado para HIV, dado por via oral em microdose, prolongou a sobrevida de camundongos que carregam a proteína priônica humana e foram infectados com pr...

2 Sep 17min

Populärt inom Vetenskap

dumma-manniskor
p3-dystopia
rss-mottagningen
angestpodden
allt-du-velat-veta
rss-ronden
kapitalet-en-podd-om-ekonomi
det-morka-psyket
ufo-sverige
svd-nyhetsartiklar
sexet
4health-med-anna-sparre
rss-arkeologi-historia-podden-som-graver-i-vart-kulturlandskap
rss-spraket
rss-vetenskapsradion
vetenskap-och-halsa
rss-vetenskapsradion-2
bildningspodden
medicinvetarna
vetenskapsradion