Computing Toolbox
Data Skeptic19 Aug 2024

Computing Toolbox

This season it's become clear that computing skills are vital for working in the natural sciences. In this episode, we were fortunate to speak with Madlen Wilmes, co-author of the book "Computing Skills for Biologists: A Toolbox". We discussed the book and why it's a great resource for students and teachers. In addition to the book, Madlen shared her experience and advice on transitioning from academia to an industry career and how data analytic skills transfer to jobs that your professionals might not always consider. Join us and learn more about the book and careers using transferable skills.

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Potholes

Potholes

Co-host Linh Da was in a biking accident after hitting a pothole. She sustained an injury that required stitches. This is the story of our quest to file a 311 complaint and track it through the City of Los Angeles's open data portal. My guests this episode are Chelsea Ursaner (LA City Open Data Team), Ben Berkowitz (CEO and founder of SeeClickFix), and Russ Klettke (Editor of pothole.info)

25 Mars 201641min

[MINI] The Elbow Method

[MINI] The Elbow Method

Certain data mining algorithms (including k-means clustering and k-nearest neighbors) require a user defined parameter k. A user of these algorithms is required to select this value, which raises the questions: what is the "best" value of k that one should select to solve their problem? This mini-episode explores the appropriate value of k to use when trying to estimate the cost of a house in Los Angeles based on the closests sales in it's area.

18 Mars 201615min

Too Good to be True

Too Good to be True

Today on Data Skeptic, Lachlan Gunn joins us to discuss his recent paper Too Good to be True. This paper highlights a somewhat paradoxical / counterintuitive fact about how unanimity is unexpected in cases where perfect measurements cannot be taken. With large enough data, some amount of error is expected. The "Too Good to be True" paper highlights three interesting examples which we discuss in the podcast. You can also watch a lecture from Lachlan on this topic via youtube here.

11 Mars 201635min

[MINI] R-squared

[MINI] R-squared

How well does your model explain your data? R-squared is a useful statistic for answering this question. In this episode we explore how it applies to the problem of valuing a house. Aspects like the number of bedrooms go a long way in explaining why different houses have different prices. There's some amount of variance that can be explained by a model, and some amount that cannot be directly measured. R-squared is the ratio of the explained variance to the total variance. It's not a measure of accuracy, it's a measure of the power of one's model.

4 Mars 201613min

Models of Mental Simulation

Models of Mental Simulation

Jessica Hamrick joins us this week to discuss her work studying mental simulation. Her research combines machine learning approaches iwth behavioral method from cognitive science to help explain how people reason and predict outcomes. Her recent paper Think again? The amount of mental simulation tracks uncertainty in the outcome is the focus of our conversation in this episode. Lastly, Kyle invited Samuel Hansen from the Relative Prime podcast to mention the Relatively Prime Season 3 kickstarter, which needs your support now through Friday, March 11th, 2016.

26 Feb 201639min

[MINI] Multiple Regression

[MINI] Multiple Regression

This episode is a discussion of multiple regression: the use of observations that are a vector of values to predict a response variable. For this episode, we consider how features of a home such as the number of bedrooms, number of bathrooms, and square footage can predict the sale price. Unlike a typical episode of Data Skeptic, these show notes are not just supporting material, but are actually featured in the episode. The site Redfin gratiously allows users to download a CSV of results they are viewing. Unfortunately, they limit this extract to 500 listings, but you can still use it to try the same approach on your own using the download link shown in the figure below.

19 Feb 201618min

Scientific Studies of People's Relationship to Music

Scientific Studies of People's Relationship to Music

Samuel Mehr joins us this week to share his perspective on why people are musical, where music comes from, and why it works the way it does. We discuss a number of empirical studies related to music and musical cognition, and dispense a few myths about music along the way. Some of Sam's work discussed in this episode include Music in the Home: New Evidence for an Intergenerational Link,Two randomized trials provide no consistent evidence for nonmusical cognitive benefits of brief preschool music enrichment, and Miscommunication of science: music cognition research in the popular press. Additional topics we discussed are also covered in a Harvard Gazette article featuring Sam titled Muting the Mozart effect. You can follow Sam on twitter via @samuelmehr.

12 Feb 201642min

[MINI] k-d trees

[MINI] k-d trees

This episode reviews the concept of k-d trees: an efficient data structure for holding multidimensional objects. Kyle gives Linhda a dictionary and asks her to look up words as a way of introducing the concept of binary search. We actually spend most of the episode talking about binary search before getting into k-d trees, but this is a necessary prerequisite.

5 Feb 201614min

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