Base by Base

Base by Base

Base by Base explores advances in genetics and genomics, with a focus on gene-disease associations, variant interpretation, protein structure, and insights from exome and genome sequencing. Each episode breaks down key studies and their clinical relevance—one base at a time. Powered by AI, Base by Base offers a new way to learn on the go. Special thanks to authors who publish under CC BY 4.0, making open-access science faster to share and easier to explore.

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Avsnitt(440)

88: Stable heritability of childhood Type 1 diabetes

88: Stable heritability of childhood Type 1 diabetes

Wei Y et al., Nature Communications - A Swedish nationwide register study of 2.93 million children born 1982–2010 found that the heritability of childhood-onset type 1 diabetes remained high (~0.83) a...

27 Juli 202518min

87: Tracing Allograft Injury with cfDNA Methylation

87: Tracing Allograft Injury with cfDNA Methylation

Nature Communications - This study used fragment-level, sequence-based DNA methylation of circulating cell-free DNA to map cellular origins of tissue damage after liver transplant. An expanded methyla...

26 Juli 202520min

86: Why Pathogenic Variant Impact Varies: Variant Effects, Polygenic Background, and Epistasis

86: Why Pathogenic Variant Impact Varies: Variant Effects, Polygenic Background, and Epistasis

Nature Communications - A biobank-scale study using UK Biobank and Mount Sinai BioMe exomes examines three genetic contributors to incomplete penetrance and variable severity of monogenic cardiometabo...

25 Juli 202519min

️ 85: Genomic landscape of virus-associated cancers

️ 85: Genomic landscape of virus-associated cancers

️ Episode 85: Genomic landscape of virus-associated cancers In this episode of PaperCast Base by Base, we explore the comparative genomic analysis of virus-positive and virus-negative tumors across ni...

24 Juli 202523min

84: NR6A1 and a newly described oculo‑vertebral‑renal (OVR) syndrome

84: NR6A1 and a newly described oculo‑vertebral‑renal (OVR) syndrome

Nature Communications - Genome sequencing identified rare NR6A1 variants in families with colobomatous microphthalmia, missing vertebrae and congenital kidney anomalies. In silico modeling, cell assay...

23 Juli 202517min

83: Dup15q in Focus: Single-cell traces of metabolic and synaptic change

83: Dup15q in Focus: Single-cell traces of metabolic and synaptic change

Perez Y et al., Nature Communications - This episode reviews a single-cell and spatial transcriptomic study of dup15q syndrome using patient postmortem cortex and hiPSC-derived cortical organoids. The...

22 Juli 202525min

82: JAK2 inhibition drives RAS clonal selection in myelofibrosis

82: JAK2 inhibition drives RAS clonal selection in myelofibrosis

Maslah N et al., Nature Communications - Translational study showing ruxolitinib and JAK2 suppression select for RAS pathway–mutant clones in myelofibrosis, enhancing their fitness via MAPK activation...

21 Juli 202519min

81: Pharmacogenetics in a Large Chinese Cohort

81: Pharmacogenetics in a Large Chinese Cohort

Wei C-Y et al et al., Nature Communications - Retrospective analysis of 486,956 Han Chinese from the Taiwan Precision Medicine Initiative evaluated prevalence and clinical impact of actionable pharmac...

20 Juli 202521min

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