Base by Base
Base by Base explores advances in genetics and genomics, with a focus on gene-disease associations, variant interpretation, protein structure, and insights from exome and genome sequencing. Each episode breaks down key studies and their clinical relevance—one base at a time. Powered by AI, Base by Base offers a new way to learn on the go. Special thanks to authors who publish under CC BY 4.0, making open-access science faster to share and easier to explore.

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Jaksot(441)

145: hs-MSI Validation: Detecting CMMRD and Pinpointing PMS2

145: hs-MSI Validation: Detecting CMMRD and Pinpointing PMS2

Marín F et al., Clinical Chemistry - This episode examines a validation study of a highly sensitive NGS-based microsatellite instability (hs-MSI) assay for diagnosing constitutional mismatch repair de...

22 Syys 202516min

144: Revising the age of the human chromosome 2 fusion

144: Revising the age of the human chromosome 2 fusion

Poszewiecka B et al., BMC Genomics (2022) 23:616 - This study presents an improved algorithm to compute the UBCS statistic and uses it to re-estimate the timing of the ancestral fusion that formed hum...

21 Syys 202517min

143: Modelling genetic 'outliers' in ancient Eurasia (S1E143)

143: Modelling genetic 'outliers' in ancient Eurasia (S1E143)

Skourtanioti E et al., Cell - This episode summarizes a population‑genomic analysis that models genetic outliers in ancient Eurasian samples, using PCA and admixture modeling to test source combinatio...

20 Syys 202518min

142: PALB2 ACMG/AMP Specifications

142: PALB2 ACMG/AMP Specifications

Richardson M et al., The American Journal of Human Genetics - An international HBOP Variant Curation Expert Panel developed PALB2-specific specifications of the 2015 ACMG/AMP variant-interpretation gu...

19 Syys 202516min

141: RetiGene: a gene atlas for inherited retinal diseases

141: RetiGene: a gene atlas for inherited retinal diseases

Rivolta C et al., The American Journal of Human Genetics - RetiGene is an expert‑curated, openly accessible atlas integrating variant data, bulk and single‑cell RNA‑seq, and functional annotations for...

18 Syys 202526min

140: SOD1 Variant Landscapes: Activity and Abundance Maps

140: SOD1 Variant Landscapes: Activity and Abundance Maps

Axakova A et al., The American Journal of Human Genetics - Axakova et al. produced comprehensive missense variant-effect maps for human SOD1 by assaying enzymatic activity in yeast and protein abundan...

17 Syys 202520min

139: MosCoverY: a coverage-based method to detect mosaic loss of Y

139: MosCoverY: a coverage-based method to detect mosaic loss of Y

Timonina V et al., The American Journal of Human Genetics - MosCoverY is a coverage-based method that estimates mosaic loss of the Y chromosome (mLOY) from exome or whole-genome sequencing by normaliz...

16 Syys 202514min

138: Social exposome and dementia in Latin America

138: Social exposome and dementia in Latin America

Migeot J et al., Nature Communications - Large multicenter study linking a multidimensional social exposome (education, food insecurity, finances, healthcare access, childhood experiences) to cognitio...

15 Syys 202519min

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