WOrM Podcast: Whole Organism Analytics Podcast13 Aug 2025

EPISODE 24: Worms on the Chip – Machine Learning Meets Toxicology

In this episode, we explore a high-tech twist on developmental toxicology. Researchers have combined microfluidic engineering with machine learning to automate the analysis of thousands of C. elegans for chemical toxicity testing — no anaesthetics or low-res imaging required.

Using the vivoChip device and a custom ML model called vivoBodySeg, the team:

Captures 3D images of ~1000 worms from 24 populations at once
Achieves near-human segmentation accuracy (Dice score: 97.8%)
Measures subtle toxicity effects like changes in body size and gut autofluorescence
Identifies EC10 and LOAEL values with high precision
Uses few-shot learning to adapt the model to new worm shapes and sizes

This platform slashes analysis time by 140× and sets a new benchmark for high-throughput New Approach Methodologies (NAMs) in toxicology.

📖 Based on the research article:

“Machine learning-based analysis of microfluidic device immobilised C. elegans for automated developmental toxicity testing”

Andrew DuPlissis, Abhishri Medewar, Evan Hegarty, et al.

Published in Scientific Reports (2025)

🔗 https://doi.org/10.1038/s41598-024-84842-x

🎧 Subscribe to the WOrM Podcast for more stories where whole-organism biology meets cutting-edge tech!

This podcast is generated with artificial intelligence and curated by Veeren. If you’d like your publication featured on the show, please get in touch.

📩 More info:

🔗 ⁠⁠www.veerenchauhan.com⁠⁠

📧 veeren.chauhan@nottingham.ac.uk

Denne episoden er hentet fra en åpen RSS-feed og er ikke publisert av Podme. Den kan derfor inneholde annonser.

Episoder(53)

EPISODE 53: Worms on Pause

Welcome to the next episode of the WOrM Podcast 🪱⏸️Today, we are talking about worms that appear to stop living—without dying.Researchers have identified a new, reversible state of suspended animatio...

5 Aug 26min

EPISODE 52: Worms in Space: Microbiomes in a Capsule

Welcome to the next episode of the WOrM Podcast 🪱🚀Today, we are looking at NemaCapsules: a new microfluidic system designed to study how host genetics and the gut microbiome influence C. elegans hea...

29 Jul 21min

EPISODE 51: The Worm Behind the Wild

Welcome to the next episode of the WOrM Podcast 🪱Today we’re looking at a review with a bold idea.Can a tiny nematode help us protect fish, amphibians, reptiles and insects from an increasingly chall...

22 Jul 16min

EPISODE 50: Fed by Mum, Built by Ribosomes

Welcome to the next episode of the WOrM Podcast 🪱Today we’re talking about inheritance.Not DNA.Not small RNAs.Not epigenetics.But ribosomes.⸻🧬 The central ideaWhen mother worms experience dietary re...

15 Jul 20min

EPISODE 49: Glowing up the Worm Proteome

Welcome to the next episode of the WOrM Podcast 🪱Today we’re looking at a paper that doesn’t answer a biological question.Instead, it builds the tools to answer thousands of biological questions in t...

8 Jul 21min

EPISODE 48: Murder Mode: How a Worm Evolved the Urge to Kill

Welcome to the next episode of the WOrM Podcast 🪱Today we're talking about a worm with teeth.And a nervous system that has been rewired — by evolution — to become aggressive.⸻🧬 The central ideaPrist...

6 Mai 14min

EPISODE 47: When Bacteria Fight Back: Bioplastic Kills the Worm

Welcome to the next episode of the WOrM Podcast 🪱Today we’re talking about something unexpected.A bioplastic — something we usually think of as sustainable, useful, even beneficial —can kill a worm.⸻...

29 Apr 21min

EPISODE 46: Turning in Time: Neural Sequences in the Worm Brain

Welcome to the next episode of the WOrM Podcast 🪱Today we’re looking at something deceptively simple: a turn.But not just that a worm turns —how the brain decides to do it.⸻🧬 The central ideaTurning...

22 Apr 19min