10. Governing Claude Code with Invisible JSON Files (The .claude Directory and Settings)

In Episode 10 of Beyond Prompting, we explore how to configure and govern Claude Code through the .claude directory and JSON settings files. Author Sho Shimoda breaks down how configuration is structured, which files take precedence when rules conflict, and how settings merge across scopes. In this episode, we cover:

What Lives Where: Distinguishing between committed project configuration (.claude/settings.json, rules/, skills/), personal overrides (.claude/settings.local.json), user-level global settings (~/.claude/), and organizationally enforced managed-settings.json.

The Five-Tier Precedence Ladder: How settings resolve from strongest to weakest: managed settings, --settings flags, .claude/settings.local.json, .claude/settings.json, and ~/.claude/settings.json.

Why Lists Merge Instead of Override: Why permission rules like permissions.allow combine additively across files rather than replacing team defaults, preventing local tweaks from silently wiping out team guardrails.

When Edits Take Effect & Workspace Trust: Which settings reload live mid-session versus which require a session restart, and why sensitive permissions wait for workspace trust before taking effect.

What Claude Code Writes About You: Managing session transcripts, rewind checkpoints, prompt history (history.jsonl), and transcript retention periods under ~/.claude/projects/.

(Note for listeners: This episode covers Chapter 10 of Sho Shimoda's book RUNNING CLAUDE: The Operator’s Guide to Chat, Cowork and Claude Code, available on Amazon as the successor book to Master Claude: Chat, Cowork and Code).

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Episoder(34)

19. Preventing Context Pollution with Subagents (Delegating Heavy Lifting)

In Episode 19 of Beyond Prompting, author Sho Shimoda explores how to manage complex, search-heavy engineering tasks without cluttering your main conversation window using Subagents. When an agent rea...

14 Okt 52min

18. Packaging and Distributing Workflows (Plugins and Marketplaces)

In Episode 18 of Beyond Prompting, author Sho Shimoda explores how to bundle your team's custom skills, commands, subagents, hooks, and MCP server configurations into a single, installable unit using ...

12 Okt 29min

17. Connecting Systems with MCP (The Stateless Wire Protocol)

In Episode 17 of Beyond Prompting, author Sho Shimoda breaks down the Model Context Protocol (MCP)—the open standard that connects Claude Code to external systems like ticket trackers, wikis, and data...

11 Okt 47min

16. Packaging Standard Operating Procedures (Agent Skills)

In Episode 16 of Beyond Prompting, author Sho Shimoda breaks down how to turn your team's recurring instructions and workflows into executable Agent Skills. Rather than re-explaining multi-step proced...

9 Okt 50min

15. Prompt Caching and Durable State (The Economics of Context and Memory)

In Episode 15 of Beyond Prompting, author Sho Shimoda breaks down prompt caching—the single largest cost lever in the Claude Code ecosystem—and demonstrates how to manage long-term project memory. We ...

5 Okt 48min

14. Memory, Compaction and Checkpoints (Managing Context in Long Sessions)

In Episode 14 of Beyond Prompting, author Sho Shimoda breaks down how to manage context budgets and session state when conversations run long. We examine the three core mechanisms that control what Cl...

4 Okt 45min

13. Curing AI Amnesia (CLAUDE.md and Rules)

In Episode 13 of Beyond Prompting, author Sho Shimoda breaks down how to configure persistent repository instructions using CLAUDE.md and rule files. Rather than treating CLAUDE.md as a generic style ...

30 Sep 46min

12. Safe Refactoring of Legacy Code (Characterize, Change, Verify)

In Episode 12 of Beyond Prompting, we tackle one of the most high-stakes tasks in software engineering: letting an AI agent refactor an existing codebase. Author Sho Shimoda breaks down why asking Cla...

29 Sep 44min