Base by Base

Base by Base

Base by Base explores advances in genetics and genomics, with a focus on gene-disease associations, variant interpretation, protein structure, and insights from exome and genome sequencing. Each episode breaks down key studies and their clinical relevance—one base at a time. Powered by AI, Base by Base offers a new way to learn on the go. Special thanks to authors who publish under CC BY 4.0, making open-access science faster to share and easier to explore.

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Episoder(463)

341: The Genetic Lottery and the Value of an Extra Year of School

341: The Genetic Lottery and the Value of an Extra Year of School

Widding-Havneraas T et al., PNAS - This study uses genetic variation related to educational attainment as a quasi-experimental instrument (Mendelian randomization) together with Norwegian registry dat...

13 Apr 29min

340: Microexon Control of Behavior — PTPRD Splicing

340: Microexon Control of Behavior — PTPRD Splicing

Imai A et al., Proceedings of the National Academy of Sciences (PNAS) - This paper shows that alternative splicing of a 12-nt microexon (meB) in Ptprd is regulated by a genetic intronic enhancer and a...

12 Apr 17min

339: cxt: A language model for population genetics

339: cxt: A language model for population genetics

Korfmann K et al., Proceedings of the National Academy of Sciences (PNAS) - This episode examines cxt, a decoder-only transformer that performs next-coalescence prediction by translating local mutatio...

11 Apr 22min

338: WDHD1 and Microcephalic Primordial Dwarfism

338: WDHD1 and Microcephalic Primordial Dwarfism

Tibbe D et al., The American Journal of Human Genetics - This study identifies bi-allelic hypomorphic WDHD1 variants in 17 subjects with a clinical spectrum from fetal lethality to microcephalic primo...

10 Apr 21min

337: ND-CNVs and internalizing–cardiometabolic multimorbidity

337: ND-CNVs and internalizing–cardiometabolic multimorbidity

Katzourou IK et al., The American Journal of Human Genetics - Population analysis of ~459,000 UK Biobank participants shows that carriers of neurodevelopmental CNVs (ND-CNVs) have higher odds of co-oc...

8 Apr 22min

336: Measuring disease likelihood in genomic ascertainment

336: Measuring disease likelihood in genomic ascertainment

Sapp JC et al., The American Journal of Human Genetics - A longitudinal study of recipients of medically actionable secondary genomic findings develops a Bayesian approach that integrates variant, fam...

7 Apr 24min

335: Altai Neandertal Genome Reveals Deep Population Structure

335: Altai Neandertal Genome Reveals Deep Population Structure

Massilania D et al., PNAS - We summarize a PNAS study reporting a ~37× genome from a ~110,000-year-old male Neandertal (Denisova 17) from Denisova Cave. The genome shows D17 is closely related to an e...

5 Apr 23min

334: LINE-1 Recombination with Diverse RNAs

334: LINE-1 Recombination with Diverse RNAs

Law C-T et al., Cell Genomics - Law and Burns introduce TiMEstamp, a comparative-genomics pipeline that dates LINE-1 insertions from multiple sequence alignments and discovers hundreds of LINE-1 chime...

5 Apr 21min

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