Base by Base

Base by Base

Base by Base explores advances in genetics and genomics, with a focus on gene-disease associations, variant interpretation, protein structure, and insights from exome and genome sequencing. Each episode breaks down key studies and their clinical relevance—one base at a time. Powered by AI, Base by Base offers a new way to learn on the go. Special thanks to authors who publish under CC BY 4.0, making open-access science faster to share and easier to explore.

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Episoder(440)

430: Proterozoic Rise: Steady Diversification of Crown Eukaryotes

430: Proterozoic Rise: Steady Diversification of Crown Eukaryotes

Sandin MM et al., Proceedings of the National Academy of Sciences - Molecular clocks and diversification models applied to a 75,975-OTU rDNA dataset, including long-read environmental sequences and 77...

23 Jul 25min

429: Validating the EAGL genetic literacy measure

429: Validating the EAGL genetic literacy measure

Barna LS et al., Human Genetics and Genomics Advances - We summarize a psychometric validation of the EAGL measure using US adult online samples. The study produced a validated 17-item EAGL-short that...

23 Jul 23min

428: Genetic regulation of plasma metabolites in people with HIV

428: Genetic regulation of plasma metabolites in people with HIV

Ait Oumelloul M et al., Human Genetics and Genomics Advances - Untargeted plasma metabolomics (1,930 features) in 1,244 participants of the Swiss HIV Cohort Study were paired with genome-wide genotype...

23 Jul 28min

427: When Genes Talk to Gut: Microbiome as Mediator of Metabolic Risk

427: When Genes Talk to Gut: Microbiome as Mediator of Metabolic Risk

Simpson RC et al., Trends in Genetics - This forum reviews evidence that host genetic variants associated with metabolic disease often overlap with loci that shape gut microbiome composition and funct...

23 Jul 25min

426: ProtoCloud — Prototypical self-explaining model for single-cell analysis

426: ProtoCloud — Prototypical self-explaining model for single-cell analysis

Guo K et al., Cell Genomics - ProtoCloud is a self-explaining deep generative model that embeds single cells around cell-type-specific prototypes to deliver accurate, uncertainty-aware cell type annot...

23 Jul 16min

425: BEAM: Bayesian reconstruction of metastatic migration histories

425: BEAM: Bayesian reconstruction of metastatic migration histories

Staklinski SJ et al., Cell Genomics 6, 101193 (2026) - This episode explores BEAM, a Bayesian framework built on BEAST 2 that jointly infers cell-lineage phylogenies and tissue-migration graphs from C...

23 Jul 23min

424: LECA's Ancient Interactome and Modern Disease

424: LECA's Ancient Interactome and Modern Disease

Cox RM et al., Cell Genomics 6, 101254 - Cox et al. reconstruct a conserved protein interaction network for the last eukaryotic common ancestor using >26,000 mass spectrometry experiments across 31 sp...

23 Jul 12min

423: How GRN Topology Shapes the Genetic Architecture of Expression

423: How GRN Topology Shapes the Genetic Architecture of Expression

Aguirre M et al., Cell Genomics - Aguirre et al. use simulated gene regulatory networks and a linear structural equation model to show how sparsity, modularity, and hub regulators shape the genome-wid...

22 Jul 25min

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